Welcome to the dMRI Phantom Utilities user documentation!

dMRI phantom utilities provide a convenient framework for analyzing diffusion-weighted MR images of 3D printed axon-mimetic (3AM) phantoms. Using this package, you can automatically mask the phantoms in an image, perform a DTI or DKI fit of phantom data, and generate a ground truth image of fibre orientation or crossing angle registered to the source DWI.

Contents:

• Installation
• Image preparation
• Usage Example
• Module index
  • automask module
  • b_selection module
  • dipy_fit module
  • image_io module
  • scan_info module
  • transform_data module